1- Comparison_Results folder 
This folder contains two folders, Excel_Files and Logs_and_PDBs. 

1.1  Excel_Files 
This folder contains all the excel files that contain the results. These files were used to generate the comparison tables. Each excel has many columns, such as R-free, R-work and many others. These are the columns we used in this Comparison; 
    File: PDB code with its resolution and extra information  
    Resolution: density map resolution    
    TimeTaking : execution time
    R-factor (0 Cycle) : R-work calculated from REFMAC zero cycle     
    R-free (0 Cycle): R-free calculated from REFMAC zero cycle                 
    F-mapCorrelation :  initial map quality        
    BuiltPDB : set to T when a pipeline built at least a one protein structure even if this structure is not a final structure.        
    Intermediate: set to T when a protein structure is not a final model.     
    Completeness: the percentage of its residues whose C alpha atoms have the same residue type as, and coordinates within 1 Å of, those of the corresponding processed deposited model from the Protein Data Bank (PDB). SHELXE completeness was calculated from only 
C alpha in correct positions within 1.0 Å because SHELXE only builds the main chain.

1.2 Logs_and_PDBs contains logs and PDBs for all the pipelines with its intermediate logs and PDBs      

2- Datasets folder contains the mtz, sequence files and deposited PDB 

3- Experiment folder contains the required scripts and files to produce the comparison results. Also, a README file that explains all steps to produce the comparison results.