Tue 25 Dec 19:27:56 GMT 2018 ############### You are running ARP/wARP 8.0 ############### Working directory /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir Job ID is set to 2hr2-3.2-parrot-hancs X-ray data file /users/emra500/scratch/Dataset/hancsChltofom/2hr2-3.2-parrot-hancs.mtz Sequence file /users/emra500/scratch/Dataset/hancsChltofom/2hr2-3.2-parrot-hancs.fasta Tracing mode WARPNTRACEPHASES Creating directory /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir/2hr2-3.2-parrot-hancs Accepted label: fp=FP Accepted label: sigfp=SIGFP Accepted label: phibest=hltofom.Phi_fom.phi Accepted label: fom=hltofom.Phi_fom.fom mtz labels taken: FP SIGFP hltofom.Phi_fom.phi hltofom.Phi_fom.fom Parameter file /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir/2hr2-3.2-parrot-hancs/arp_warp_classic.par Job launched in /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir/2hr2-3.2-parrot-hancs ############### You are running ARP/wARP 8.0 ############### ============================================================ Please cite at least one of the publications below for the ARP/wARP application you are using: Lamzin VS, Wilson KS. (1993) Automated refinement of protein models. Acta Crystallogr D Biol Crystallogr. 49, 129-147 Morris RJ, Perrakis A. Lamzin VS. (2003) ARP/wARP and automatic interpretation of protein electron density maps. In Methods Enzymol. (Carter, C.W. & Sweet, R.M. eds.) 374, 229-244 Langer GG, Hazledine S, Wiegels T, Carolan C, Lamzin VS. (2013) Visual automated macromolecular model building. Acta Crystallogr D Biol Crystallogr. 69, 635-641 Use of Refmac is an essential part of model building with ARP/wARP. Please acknowledge the use of Refmac by citing the following publication: Murshudov GN, Skubak P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr D Biol Crystallogr. 67, 355-367 ============================================================ Tue 25 Dec 19:28:11 GMT 2018 You are running ARP/wARP version 8.0 Entering warp_tracing.sh from COMMAND_LINE_SUBMISSION The working directory: /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir/2hr2-3.2-parrot-hancs ARP/wARP software version: 8.0 The parameter file: /mnt/lustre/users/emra500/PipeliensFastaNoRFree/hancs/ArpWArp/wArpResults/WorkingDir/2hr2-3.2-parrot-hancs/arp_warp_classic.par ARP/wARP will run in subdirectory: temp_tracing Checking the estimated solvent content Computed solvent content is outside allowed range. Target number of residues/nucleotides is changed to 956 and 0 Target number of residues in the AU: 956 Target solvent content: 0.6389 Checking the provided sequence file Detected sequence length: 159 Maximum limit of NCS related copies: 60 Number of NCS-related molecules: 6 Adjusted target number of residues: 954 Adjusted target solvent content: 0.64 Input MTZ file: 2hr2-3.2-parrot-hancs.mtz.cad Column labels for model refinement: FP SIGFP Column labels to obtain initial map: FP hltofom.Phi_fom.phi hltofom.Phi_fom.fom Space group number: 19 Cell parameters: 89.090 91.280 176.170 90.000 90.000 90.000 Input sequence file: 2hr2-3.2-parrot-hancs.fasta_lf Building free atoms model in initial map for 7632 target number of atoms Had to go as low as 0.85 sigma, to complete atoms search. ARP/wARP will be iterated with REFMAC5 50 refinement / model update cycles will be run in total. Atoms will be removed below 1.0 sigma in 2mFoDFc map and added above 3.2 sigma in mFoDFc map. Refmac Refinement Parameters 3 REFMAC cycle(s) with 1.0 1.0 fractional shifts damping in each cycle. Conditional restraints will be used Weight for restraints is set to AUTO Solvent mask correction will be used Anisotropic scaling with no bulk solvent correction Model Building Parameters Main chain tracing will take place every 5 refinement / model update cycles. Side chain docking will be performed from autobuilding cycle number 1 NCS extension will be performed at every building cycle. NCS restraints will be applied at each refinement cycle. Loops will be built when appropriate and at the last cycle Resolution range: 88.085 3.200 Wilson plot Bfac: 71.25 24032 reflections ( 98.55 % complete ) and 0 restraints for refining 8509 atoms. Observations/parameters ratio is 0.71 ------------------------------------------------------ Starting model: R = 0.3105 (Rfree = 0.000). ------------------------------------------------------ Cycle 0: After refmac, R = 0.2772 (Rfree = 0.000) for 8509 atoms. Found 76 (76 requested) and removed 70 (38 requested) atoms. ------------------------------------------------------ Building Cycle 1 Atomic shape factors 3.20 2.64 Search for helices and strands: 0 residues in 0 chains, 8763 seeds are put forward NCS extension: 0 residues added, 8763 seeds are put forward Round 1: 602 peptides, 92 chains. Longest chain 17 peptides. Score 0.457 Round 2: 687 peptides, 86 chains. Longest chain 22 peptides. Score 0.566 Round 3: 690 peptides, 78 chains. Longest chain 41 peptides. Score 0.600 Round 4: 736 peptides, 77 chains. Longest chain 25 peptides. Score 0.641 Round 5: 734 peptides, 68 chains. Longest chain 30 peptides. Score 0.672 Taking the results from Round 5 Chains 86, Residues 666, Estimated correctness of the model 59.0 % 23 chains (269 residues) have been docked in sequence ------------------------------------------------------ Failed to save intermediate PDB 24032 reflections ( 98.55 % complete ) and 11812 restraints for refining 6966 atoms. 8276 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 1: After refmac, R = 0.2697 (Rfree = 0.000) for 6966 atoms. Found 62 (62 requested) and removed 74 (31 requested) atoms. Cycle 2: After refmac, R = 0.2606 (Rfree = 0.000) for 6869 atoms. Found 61 (62 requested) and removed 57 (31 requested) atoms. Cycle 3: After refmac, R = 0.2628 (Rfree = 0.000) for 6806 atoms. Found 61 (61 requested) and removed 47 (30 requested) atoms. Cycle 4: After refmac, R = 0.2285 (Rfree = 0.000) for 6756 atoms. Found 42 (61 requested) and removed 51 (30 requested) atoms. Failed to save intermediate PDB Cycle 5: After refmac, R = 0.2156 (Rfree = 0.000) for 6723 atoms. Found 31 (60 requested) and removed 44 (30 requested) atoms. ------------------------------------------------------ Building Cycle 2 Atomic shape factors 3.20 2.64 Search for helices and strands: 0 residues in 0 chains, 7047 seeds are put forward NCS extension: 5 residues added (11 deleted due to clashes), 7052 seeds are put forward Round 1: 695 peptides, 77 chains. Longest chain 25 peptides. Score 0.608 Round 2: 713 peptides, 64 chains. Longest chain 41 peptides. Score 0.670 Round 3: 738 peptides, 70 chains. Longest chain 33 peptides. Score 0.668 Round 4: 729 peptides, 74 chains. Longest chain 31 peptides. Score 0.647 Round 5: 699 peptides, 71 chains. Longest chain 27 peptides. Score 0.635 Taking the results from Round 2 Chains 78, Residues 649, Estimated correctness of the model 58.5 % 24 chains (324 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 11415 restraints for refining 6967 atoms. 7689 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 6: After refmac, R = 0.2574 (Rfree = 0.000) for 6967 atoms. Found 62 (62 requested) and removed 66 (31 requested) atoms. Cycle 7: After refmac, R = 0.2541 (Rfree = 0.000) for 6937 atoms. Found 62 (62 requested) and removed 75 (31 requested) atoms. Cycle 8: After refmac, R = 0.2611 (Rfree = 0.000) for 6892 atoms. Found 62 (62 requested) and removed 61 (31 requested) atoms. Cycle 9: After refmac, R = 0.2609 (Rfree = 0.000) for 6861 atoms. Found 61 (61 requested) and removed 68 (30 requested) atoms. Failed to save intermediate PDB Cycle 10: After refmac, R = 0.2527 (Rfree = 0.000) for 6837 atoms. Found 61 (61 requested) and removed 52 (30 requested) atoms. ------------------------------------------------------ Building Cycle 3 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7141 seeds are put forward NCS extension: 18 residues added (8 deleted due to clashes), 7159 seeds are put forward Round 1: 700 peptides, 77 chains. Longest chain 25 peptides. Score 0.613 Round 2: 761 peptides, 66 chains. Longest chain 32 peptides. Score 0.697 Round 3: 741 peptides, 59 chains. Longest chain 38 peptides. Score 0.707 Round 4: 728 peptides, 67 chains. Longest chain 30 peptides. Score 0.671 Round 5: 721 peptides, 65 chains. Longest chain 26 peptides. Score 0.673 Taking the results from Round 3 Chains 76, Residues 682, Estimated correctness of the model 66.7 % 27 chains (410 residues) have been docked in sequence Building loops using Loopy2018 Built loop between residues 16 A and 23 A Built loop between residues 38 A and 44 A Built loop between residues 45 C and 56 C Built loop between residues 64 C and 75 C Built loop between residues 101 C and 104 C Built loop between residues 27 B and 30 B Built loop between residues 78 B and 87 B Built loop between residues 113 B and 122 B Built loop between residues 22 D and 26 D Built loop between residues 58 D and 66 D 58 chains (727 residues) following loop building 17 chains (471 residues) in sequence following loop building ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 9932 restraints for refining 6967 atoms. 5370 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 11: After refmac, R = 0.2677 (Rfree = 0.000) for 6967 atoms. Found 62 (62 requested) and removed 100 (31 requested) atoms. Failed to save intermediate PDB Cycle 12: After refmac, R = 0.2431 (Rfree = 0.000) for 6874 atoms. Found 50 (61 requested) and removed 57 (31 requested) atoms. Failed to save intermediate PDB Cycle 13: After refmac, R = 0.2463 (Rfree = 0.000) for 6838 atoms. Found 59 (59 requested) and removed 57 (30 requested) atoms. Cycle 14: After refmac, R = 0.2498 (Rfree = 0.000) for 6820 atoms. Found 57 (57 requested) and removed 51 (30 requested) atoms. Cycle 15: After refmac, R = 0.2193 (Rfree = 0.000) for 6804 atoms. Found 37 (56 requested) and removed 47 (30 requested) atoms. ------------------------------------------------------ Building Cycle 4 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7105 seeds are put forward NCS extension: 81 residues added (107 deleted due to clashes), 7186 seeds are put forward Round 1: 721 peptides, 69 chains. Longest chain 37 peptides. Score 0.659 Round 2: 720 peptides, 70 chains. Longest chain 38 peptides. Score 0.654 Round 3: 724 peptides, 67 chains. Longest chain 35 peptides. Score 0.668 Round 4: 721 peptides, 68 chains. Longest chain 30 peptides. Score 0.662 Round 5: 725 peptides, 69 chains. Longest chain 61 peptides. Score 0.662 Taking the results from Round 3 Chains 77, Residues 657, Estimated correctness of the model 58.1 % 25 chains (348 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 11471 restraints for refining 6965 atoms. 7599 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 16: After refmac, R = 0.2547 (Rfree = 0.000) for 6965 atoms. Found 55 (56 requested) and removed 74 (31 requested) atoms. Failed to save intermediate PDB Cycle 17: After refmac, R = 0.2344 (Rfree = 0.000) for 6902 atoms. Found 40 (56 requested) and removed 54 (31 requested) atoms. Cycle 18: After refmac, R = 0.2223 (Rfree = 0.000) for 6873 atoms. Found 27 (55 requested) and removed 44 (30 requested) atoms. Cycle 19: After refmac, R = 0.2156 (Rfree = 0.000) for 6845 atoms. Found 23 (55 requested) and removed 41 (30 requested) atoms. Failed to save intermediate PDB Cycle 20: After refmac, R = 0.2109 (Rfree = 0.000) for 6819 atoms. Found 25 (55 requested) and removed 40 (30 requested) atoms. ------------------------------------------------------ Building Cycle 5 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7110 seeds are put forward NCS extension: 16 residues added (7 deleted due to clashes), 7126 seeds are put forward Round 1: 664 peptides, 77 chains. Longest chain 25 peptides. Score 0.582 Round 2: 715 peptides, 69 chains. Longest chain 29 peptides. Score 0.654 Round 3: 678 peptides, 66 chains. Longest chain 28 peptides. Score 0.637 Round 4: 677 peptides, 74 chains. Longest chain 25 peptides. Score 0.605 Round 5: 686 peptides, 75 chains. Longest chain 26 peptides. Score 0.609 Taking the results from Round 2 Chains 75, Residues 646, Estimated correctness of the model 54.8 % 29 chains (388 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 10984 restraints for refining 6967 atoms. 6979 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 21: After refmac, R = 0.2574 (Rfree = 0.000) for 6967 atoms. Found 56 (56 requested) and removed 80 (31 requested) atoms. Cycle 22: After refmac, R = 0.2480 (Rfree = 0.000) for 6926 atoms. Found 56 (56 requested) and removed 66 (31 requested) atoms. Cycle 23: After refmac, R = 0.2481 (Rfree = 0.000) for 6895 atoms. Found 56 (56 requested) and removed 47 (31 requested) atoms. Failed to save intermediate PDB Cycle 24: After refmac, R = 0.2165 (Rfree = 0.000) for 6885 atoms. Found 23 (55 requested) and removed 44 (30 requested) atoms. Failed to save intermediate PDB Cycle 25: After refmac, R = 0.2083 (Rfree = 0.000) for 6852 atoms. Found 24 (55 requested) and removed 36 (30 requested) atoms. ------------------------------------------------------ Building Cycle 6 Atomic shape factors 3.20 2.64 Search for helices and strands: 0 residues in 0 chains, 7160 seeds are put forward NCS extension: 28 residues added (5 deleted due to clashes), 7188 seeds are put forward Round 1: 679 peptides, 73 chains. Longest chain 28 peptides. Score 0.611 Round 2: 712 peptides, 69 chains. Longest chain 29 peptides. Score 0.652 Round 3: 698 peptides, 70 chains. Longest chain 29 peptides. Score 0.637 Round 4: 718 peptides, 69 chains. Longest chain 29 peptides. Score 0.656 Round 5: 706 peptides, 66 chains. Longest chain 30 peptides. Score 0.658 Taking the results from Round 5 Chains 72, Residues 640, Estimated correctness of the model 55.7 % 18 chains (267 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 12106 restraints for refining 6966 atoms. 8623 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 26: After refmac, R = 0.2546 (Rfree = 0.000) for 6966 atoms. Found 56 (56 requested) and removed 83 (31 requested) atoms. Cycle 27: After refmac, R = 0.2550 (Rfree = 0.000) for 6910 atoms. Found 56 (56 requested) and removed 51 (31 requested) atoms. Cycle 28: After refmac, R = 0.2550 (Rfree = 0.000) for 6887 atoms. Found 56 (56 requested) and removed 50 (31 requested) atoms. Cycle 29: After refmac, R = 0.2535 (Rfree = 0.000) for 6876 atoms. Found 55 (55 requested) and removed 51 (30 requested) atoms. Cycle 30: After refmac, R = 0.2524 (Rfree = 0.000) for 6864 atoms. Found 55 (55 requested) and removed 50 (30 requested) atoms. ------------------------------------------------------ Building Cycle 7 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7204 seeds are put forward NCS extension: 10 residues added (12 deleted due to clashes), 7214 seeds are put forward Round 1: 651 peptides, 78 chains. Longest chain 30 peptides. Score 0.566 Round 2: 690 peptides, 71 chains. Longest chain 36 peptides. Score 0.627 Round 3: 695 peptides, 73 chains. Longest chain 30 peptides. Score 0.624 Round 4: 710 peptides, 71 chains. Longest chain 47 peptides. Score 0.643 Round 5: 717 peptides, 71 chains. Longest chain 32 peptides. Score 0.649 Taking the results from Round 5 Chains 81, Residues 646, Estimated correctness of the model 53.6 % 18 chains (253 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 12118 restraints for refining 6967 atoms. 8641 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 31: After refmac, R = 0.2639 (Rfree = 0.000) for 6967 atoms. Found 56 (56 requested) and removed 71 (31 requested) atoms. Cycle 32: After refmac, R = 0.2620 (Rfree = 0.000) for 6920 atoms. Found 56 (56 requested) and removed 49 (31 requested) atoms. Failed to save intermediate PDB Cycle 33: After refmac, R = 0.2677 (Rfree = 0.000) for 6910 atoms. Found 56 (56 requested) and removed 51 (31 requested) atoms. Cycle 34: After refmac, R = 0.2657 (Rfree = 0.000) for 6902 atoms. Found 56 (56 requested) and removed 61 (31 requested) atoms. Cycle 35: After refmac, R = 0.2629 (Rfree = 0.000) for 6882 atoms. Found 55 (55 requested) and removed 54 (30 requested) atoms. ------------------------------------------------------ Building Cycle 8 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7193 seeds are put forward NCS extension: 22 residues added (15 deleted due to clashes), 7215 seeds are put forward Round 1: 648 peptides, 83 chains. Longest chain 25 peptides. Score 0.542 Round 2: 683 peptides, 78 chains. Longest chain 32 peptides. Score 0.594 Round 3: 665 peptides, 75 chains. Longest chain 23 peptides. Score 0.591 Round 4: 641 peptides, 73 chains. Longest chain 22 peptides. Score 0.578 Round 5: 660 peptides, 69 chains. Longest chain 33 peptides. Score 0.610 Taking the results from Round 5 Chains 78, Residues 591, Estimated correctness of the model 43.7 % 15 chains (212 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 12712 restraints for refining 6966 atoms. 9600 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 36: After refmac, R = 0.2711 (Rfree = 0.000) for 6966 atoms. Found 56 (56 requested) and removed 68 (31 requested) atoms. Cycle 37: After refmac, R = 0.2582 (Rfree = 0.000) for 6936 atoms. Found 45 (56 requested) and removed 39 (31 requested) atoms. Cycle 38: After refmac, R = 0.2485 (Rfree = 0.000) for 6926 atoms. Found 28 (56 requested) and removed 37 (31 requested) atoms. Cycle 39: After refmac, R = 0.2416 (Rfree = 0.000) for 6900 atoms. Found 26 (56 requested) and removed 40 (31 requested) atoms. Cycle 40: After refmac, R = 0.2336 (Rfree = 0.000) for 6875 atoms. Found 26 (55 requested) and removed 35 (30 requested) atoms. ------------------------------------------------------ Building Cycle 9 Atomic shape factors 3.22 2.66 Search for helices and strands: 0 residues in 0 chains, 7188 seeds are put forward NCS extension: 14 residues added (10 deleted due to clashes), 7202 seeds are put forward Round 1: 578 peptides, 83 chains. Longest chain 18 peptides. Score 0.473 Round 2: 624 peptides, 79 chains. Longest chain 22 peptides. Score 0.537 Round 3: 651 peptides, 77 chains. Longest chain 26 peptides. Score 0.570 Round 4: 653 peptides, 79 chains. Longest chain 26 peptides. Score 0.564 Round 5: 657 peptides, 80 chains. Longest chain 24 peptides. Score 0.563 Taking the results from Round 3 Chains 84, Residues 574, Estimated correctness of the model 32.7 % 10 chains (119 residues) have been docked in sequence ------------------------------------------------------ 24032 reflections ( 98.55 % complete ) and 13586 restraints for refining 6966 atoms. 10922 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 41: After refmac, R = 0.2531 (Rfree = 0.000) for 6966 atoms. Found 54 (56 requested) and removed 54 (31 requested) atoms. Cycle 42: After refmac, R = 0.2411 (Rfree = 0.000) for 6948 atoms. Found 14 (56 requested) and removed 45 (31 requested) atoms. Failed to save intermediate PDB Cycle 43: After refmac, R = 0.2349 (Rfree = 0.000) for 6910 atoms. Found 9 (56 requested) and removed 31 (31 requested) atoms. Cycle 44: After refmac, R = 0.2318 (Rfree = 0.000) for 6884 atoms. Found 7 (55 requested) and removed 30 (30 requested) atoms. Cycle 45: After refmac, R = 0.2299 (Rfree = 0.000) for 6858 atoms. Found 18 (55 requested) and removed 31 (30 requested) atoms. ------------------------------------------------------ Building Cycle 10 Atomic shape factors 3.21 2.65 Search for helices and strands: 0 residues in 0 chains, 7167 seeds are put forward NCS extension: 17 residues added (4 deleted due to clashes), 7184 seeds are put forward Round 1: 577 peptides, 88 chains. Longest chain 21 peptides. Score 0.449 Round 2: 608 peptides, 75 chains. Longest chain 22 peptides. Score 0.539 Round 3: 623 peptides, 72 chains. Longest chain 26 peptides. Score 0.566 Round 4: 611 peptides, 80 chains. Longest chain 17 peptides. Score 0.520 Round 5: 605 peptides, 72 chains. Longest chain 24 peptides. Score 0.549 Taking the results from Round 3 Last building cycle: Chain fragments will be rearranged Chains 79, Residues 551, Estimated correctness of the model 31.6 % 13 chains (144 residues) have been docked in sequence Sequence coverage is 26 % Consider running further cycles of model building using 2hr2-3_warpNtrace.pdb as input Building loops using Loopy2018 Built loop between residues 14 C and 27 C 77 chains (557 residues) following loop building 12 chains (156 residues) in sequence following loop building ------------------------------------------------------ ---> Final restrained refinement block. No atom update. 24032 reflections ( 98.55 % complete ) and 13416 restraints for refining 6967 atoms. 10689 conditional restraints added. Observations/parameters ratio is 0.86 ------------------------------------------------------ Cycle 46: After refmac, R = 0.2515 (Rfree = 0.000) for 6967 atoms. Found 0 (56 requested) and removed 28 (31 requested) atoms. Cycle 47: After refmac, R = 0.2396 (Rfree = 0.000) for 6916 atoms. Found 0 (56 requested) and removed 3 (31 requested) atoms. Cycle 48: After refmac, R = 0.2411 (Rfree = 0.000) for 6902 atoms. Found 0 (56 requested) and removed 14 (31 requested) atoms. Cycle 49: After refmac, R = 0.2311 (Rfree = 0.000) for 6879 atoms. Found 0 (55 requested) and removed 11 (30 requested) atoms. Writing output files ... Normal termination of warpNtrace Tue 25 Dec 21:41:25 GMT 2018 Job finished. TimeTaking 133.49